Title: Whole-Genome Duplication and the Functional Diversification of Teleost Fish Hemoglobins
Author: Opazo, J. C.; Butts, J.; Nery, M. F.; Storz, J.F.; Hoffmann, F.G.
Is part of: Molecular Biology and Evolution, v. 30, p. 140 - 153
Citation: Opazo, J. C.; Butts, J.; Nery, M. F.; Storz, J.F.; Hoffmann, F.G.; Whole-Genome Duplication and the Functional Diversification of Teleost Fish Hemoglobins. Molecular Biology and Evolution, v.30, p. 140-153, 2012
Abstract: Subsequent to the two rounds of whole-genome duplication that occurred in the common ancestor of vertebrates, a third genome duplication occurred in the stem lineage of teleost fishes. This teleost-specific genome duplication (TGD) is thought to have provided genetic raw materials for the physiological, morphological, and behavioral diversification of this highly speciose group. The extreme physiological versatility of teleost fish is manifest in their diversity of blood-gas transport traits, which reflects the myriad solutions that have evolved to maintain tissue O-2 delivery in the face of changing metabolic demands and environmental O-2 availability during different ontogenetic stages. During the course of development, regulatory changes in blood-O-2 transport are mediated by the expression of multiple, functionally distinct hemoglobin (Hb) isoforms that meet the particular O-2-transport challenges encountered by the developing embryo or fetus (in viviparous or oviparous species) and in free-swimming larvae and adults. The main objective of the present study was to assess the relative contributions of whole-genome duplication, large-scale segmental duplication, and small-scale gene duplication in producing the extraordinary functional diversity of teleost Hbs. To accomplish this, we integrated phylogenetic reconstructions with analyses of conserved synteny to characterize the genomic organization and evolutionary history of the globin gene clusters of teleosts. These results were then integrated with available experimental data on functional properties and developmental patterns of stage-specific gene expression. Our results indicate that multiple alpha- and beta-globin genes were present in the common ancestor of gars (order Lepisoteiformes) and teleosts. The comparative genomic analysis revealed that teleosts possess a dual set of TGD-derived globin gene clusters, each of which has undergone lineage-specific changes in gene content via repeated duplication and deletion events. Phylogenetic reconstructions revealed that paralogous genes convergently evolved similar functional properties in different teleost lineages. Consistent with other recent studies of globin gene family evolution in vertebrates, our results revealed evidence for repeated evolutionary transitions in the developmental regulation of Hb synthesis.
Funding: The authors thank Andi Kautt, Axel Meyer, David A. Ray, and two anonymous reviewers for critical reviews of this manuscript. M.F.N. holds a CONICYT doctoral fellowship. This work was supported by National Science Foundation (EPS-0903787) grant to F. G. H., National Institutes of Health/NHLBI (R01 HL087216 and HL087216-S1) and the National Science Foundation (IOS-0949931) grant to J.F.S., and Fondo Nacional de Desarrollo Cientifico y Tecnologico (FONDECYT 1120032) grant to J.C.O.